NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214917_10069119

Scaffold Ga0214917_10069119


Overview

Basic Information
Taxon OID3300022752 Open in IMG/M
Scaffold IDGa0214917_10069119 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2234
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002162Metagenome / Metatranscriptome588Y
F007469Metagenome / Metatranscriptome350Y
F105165Metagenome / Metatranscriptome100N

Sequences

Protein IDFamilyRBSSequence
Ga0214917_100691191F105165AGGMYAQMVCVYVGSDMTVKDDMLQLAWIFLGLGAFTWIIYEIRETAFQNGYWKGREAGWQSHRRLTNIRAKSDEVFDYDKN
Ga0214917_100691194F007469AGGAGGMGELQIIDGSGLTATFTDNGVIVEPSVEHCELCNDDRLLHEGDLLRCYSCHAINRIPYNA
Ga0214917_100691195F002162GGAMPKYDYMCDGEGSLIVLDLPMDHKIPHCQVCGSRLRRVFTAVPAIFKGTGWASKDG
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