NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214917_10039294

Scaffold Ga0214917_10039294


Overview

Basic Information
Taxon OID3300022752 Open in IMG/M
Scaffold IDGa0214917_10039294 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3386
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (66.67%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002162Metagenome / Metatranscriptome588Y
F007469Metagenome / Metatranscriptome350Y
F020681Metagenome / Metatranscriptome222Y
F037698Metagenome / Metatranscriptome167Y
F105165Metagenome / Metatranscriptome100N

Sequences

Protein IDFamilyRBSSequence
Ga0214917_1003929411F105165GGAMTVKDDMLQLAWIFMGLGIGAWIIHEIKETAFQNGYWKGRADGWNMHRRMAETKRKSDEVFDYDKN
Ga0214917_100392944F037698AGGAGMCDSHDQGTHQIDWAYQNELRKQWLLNNPDSDYEGWMSI
Ga0214917_100392945F020681AGGMVKFRCNFCSANTEFIWLDGYETHEGFRVYQCLKCCGVGVKNEAESTDTQEPVMRCNKCGAWMFADKECHTCAILMIKERIK
Ga0214917_100392946F002162GGAMPNYEYECPGEEIAIVVELPMDHKTPNCQVCGAIMRRVYTAVPAIFKGNGWAGKDG
Ga0214917_100392947F007469GGAGGMGELQIIDGSGLTATFTDDEIKVEPSTIRCDTCNDDRLLHEGDLLRCYVCHTINRIPYNA
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Institute for Fundamental Biomedical Research
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