NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214917_10035615

Scaffold Ga0214917_10035615


Overview

Basic Information
Taxon OID3300022752 Open in IMG/M
Scaffold IDGa0214917_10035615 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3631
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (46.15%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F045698Metagenome / Metatranscriptome152N
F059897Metagenome / Metatranscriptome133N
F091905Metagenome / Metatranscriptome107N

Sequences

Protein IDFamilyRBSSequence
Ga0214917_1003561511F045698AGGAMSLPEKQLDVIDLTKSIREVHYQLQLDYQALMLKATTLQAENEELKERLNKIAEKIQLG
Ga0214917_1003561512F059897AGGMRLYSKNNKDDLFDRFEIDINFPIFKWGTKPGNEWATDFPTKYIDIKFDTHLVYRKDVTWTYFDLSFLGFGFTITKQNSF
Ga0214917_100356155F091905N/AMNKPIGATQKQLEENNIEWVYCSEYTHRNVYEPIWALRHSSEYDWAKDRARLLQEIANLKRDCHHLTQCIDPFDTNDYTYNILRKYIPELPEKHPMDK
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