NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214917_10032763

Scaffold Ga0214917_10032763


Overview

Basic Information
Taxon OID3300022752 Open in IMG/M
Scaffold IDGa0214917_10032763 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3859
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F056556Metagenome137N
F068578Metagenome / Metatranscriptome124N

Sequences

Protein IDFamilyRBSSequence
Ga0214917_100327634F056556AGGAGGMKKQIVTVNCQLPEWFEKHSLPRMDEASKRWDAKLVVIRPDKPIGLLAKMALVEFVQNSDRTLFVDSDVLISRNCENPFEAFPSGHFYACADAPHGDQLHWGRANEMILSQAMLGSIKWTQGYFNTGVMLCDSGHAGAWSNFVYAPFAFPEQTFTNYRARALGYSIRFLGWEWNAMEINTPNDKKQSDGFMPHAAGIYGDDRAKWIEEMDKVLP
Ga0214917_100327637F068578GGAMESIMEAINSLGTAVRELQEGLPVKNHTEPTIEDVATHASNVIKKIMNRGSSKSGFGDWFHKNSLRYNSDRAISHMTKAMQQIDGNVSSPDDSGETCIDHLERALVRAAFTLYKAKEGKI
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