NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214917_10025152

Scaffold Ga0214917_10025152


Overview

Basic Information
Taxon OID3300022752 Open in IMG/M
Scaffold IDGa0214917_10025152 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4688
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (64.29%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000645Metagenome / Metatranscriptome962Y
F002241Metagenome / Metatranscriptome579Y
F005585Metagenome / Metatranscriptome395Y
F014613Metagenome / Metatranscriptome261Y

Sequences

Protein IDFamilyRBSSequence
Ga0214917_1002515210F000645GAGMSNYLDDYVSVQDRLKEFINAYPDYRIKTHTLAESLVANCDVYIVKVELYRTEADANPWTTGLSSESKSKQYALELAETGALGRALNLAGFFAKPTGAPKKPIQTTKPELASFIKEQRPNDPEPIVWDVSAIAAELGAEVIDEIPLCKCGRGPMILKSGTKEGKEYRGYTCPSRERAHQCPARWMRIGADGHWVFQK
Ga0214917_1002515213F002241AGGAGMGREEVSRPHSVKYIRQLMEWGFDKEFIAKDCGINLASLETRLRRANERERRNGNQGTESGTSSGESDS
Ga0214917_100251528F014613GAGMLPNLSDEAVAAIIIGVPFIGLYIWSLWTSAKAKAFNEGYKRGRSSVRYTEVIK
Ga0214917_100251529F005585GAGGVTGSTMLVTPYSTEGLSMATRGTIFYAFTKSRELSVFSSETHLNWRLLLLRQNSQEWWKVQSAKIRISISLDTPLSWVDADFLHQKIGMTLSLTRNHNQNQYCDYCKSRWGQIKNEWHLKARTPAVWKVQSETPLRKAQVRFYCQPCADEVQNWPDGTFYSLKEQLEDAINNFAGREKLNVELPR
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