NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214917_10015374

Scaffold Ga0214917_10015374


Overview

Basic Information
Taxon OID3300022752 Open in IMG/M
Scaffold IDGa0214917_10015374 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6648
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (87.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006300Metagenome376Y
F011293Metagenome292Y
F020893Metagenome221Y

Sequences

Protein IDFamilyRBSSequence
Ga0214917_1001537412F020893N/AMQTEITVALISAVALIVAGVPAALVERARRENADDHAYVRKILTRVETKLDNHLEDHINGFTRRNKSEAEQNR
Ga0214917_1001537414F006300GGAGMKWQYILEDWAKSFVAGSVAVLITSGYSATDALKAGLAAVLPLIYAWANTKDARYGRK
Ga0214917_100153745F011293GAGGVTTRPDPGDAAYVAWQLTKNGERMKQYGHPWNDYTMVRRLFSTLTNYKHNLTVQEAALFMVCVKLARLMKSLDVEKMHEDSLIDAIGYLNCLHMIDAKDQLKDAPKHIIGDMVVEWER
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