NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214917_10015199

Scaffold Ga0214917_10015199


Overview

Basic Information
Taxon OID3300022752 Open in IMG/M
Scaffold IDGa0214917_10015199 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6699
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (20.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota(Source: Euk_MAG)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002333Metagenome569Y
F020161Metagenome / Metatranscriptome225Y
F040073Metagenome162Y

Sequences

Protein IDFamilyRBSSequence
Ga0214917_1001519910F020161N/AMAQITSTKLKELSVIKLYEHYAALEKSLPLLTAESQDLARAELESCIDLRSEKVDRIYYAMAAHEDALERIKKEGDLVATAKLHHTSQLKSLKGLLSYLRRVLPLDTNKITGRNYQFTLIKKKELTVEINSDPELWDADEKSTYCMEEETTTTKRVVLRSFSGEVLSDRTEPKTTTKVLPNLD
Ga0214917_100151996F040073AGTAGMLQFILSPEDMFWQEKMTRQINDCSSIAELREMAVLLTKIATTRQVVIKGLVKDSLDLMQEAYHPKGMNDVPTDEL
Ga0214917_100151997F002333N/AMTITATHDEFNSSPQATHTELNAAQATIYTRTNISRAFPDFDDSGVVGIYLRGDSCFVVYRDGTERLYPKDAIKTAFISYTHRLKDFFSYLGPNYRGPSIWHDNSYILFKGWNYSHTLGHLNDNAKLQSQWADKFIRLTDPTKLKALLQSEHTDLGHLVAPDGLRLPDRLPDLDSELEAVQEERPMFGEPNCSCGSFQRQLNNLPLFQQEIEGFKPHCIHLTWIAKYRSLLSKRTEARDACPAGVPHTCVAWWYQPPMDHASDGRFLLLHTKSGVQAPLSHWRTYKPKESFTQRHAWDLFFSMLDAGYVPFPGTSLPQLRMAFKHD
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