NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214917_10013045

Scaffold Ga0214917_10013045


Overview

Basic Information
Taxon OID3300022752 Open in IMG/M
Scaffold IDGa0214917_10013045 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7467
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (55.56%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006891Metagenome362Y
F009066Metagenome323Y
F031026Metagenome183N
F043823Metagenome155N

Sequences

Protein IDFamilyRBSSequence
Ga0214917_1001304510F031026GAGMRGGRNALLLILSLALASCATVSQTQDGPPPSPDTISYFIYAWDKAERTNKPCPQAYRDLFAQSLKALSDSLAETERERARR
Ga0214917_1001304512F009066N/AMELTMNGAEVMSPEHRKHLATIINDLTNDVSAKYVKGQLEHGGALWRRPVWKDAWDEVLDLCTYMHTLKLQLGVIADMALQGAADESVAAATSREACRQILAVLHGLPGSEDKK
Ga0214917_1001304515F043823N/AMKKVKTNLTIDPKVKRKGEQLAKKNGLSFSAYVTTLLVRELSESKK
Ga0214917_100130457F006891GAGMSTDQINELSERLSVVRESVARIETRQSVILDLLERSQASLGEYHGRLTNIEREAHTIKTKLWLVALVSGAVVSTAWELIKRRFGL
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