| Basic Information | |
|---|---|
| Taxon OID | 3300022752 Open in IMG/M |
| Scaffold ID | Ga0214917_10006067 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 12691 |
| Total Scaffold Genes | 25 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 21 (84.00%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Georgia | |||||||
| Coordinates | Lat. (o) | 34.2611 | Long. (o) | -83.95 | Alt. (m) | Depth (m) | 2 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000545 | Metagenome / Metatranscriptome | 1038 | Y |
| F000645 | Metagenome / Metatranscriptome | 962 | Y |
| F001322 | Metagenome | 722 | Y |
| F002241 | Metagenome / Metatranscriptome | 579 | Y |
| F005585 | Metagenome / Metatranscriptome | 395 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0214917_1000606710 | F005585 | GGA | MLVTPYSTGALSMATRGTIFYAFTKSRELSVFSSETHLNWHLLLLRQNSQEWWKVQSARIRISISLDTPLSWVDADFLHQKIGMTLSLTRNHNQNQYCDYCKSRWGQIKGEWHLKARTPAVWKVQSETPLRKAQVRFYCQPCADEVQNWPDGTFYSLKEQLEDAINNFAGREKLNVELPR |
| Ga0214917_1000606719 | F001322 | GGCGG | MTLWNPVYRVKVNGSTVTSATLSGLTITSGRTDIYSQPIAGYCNLTLIETAEASVPFEINDAVTIEVQDSTATYVNLFGGFITDLGITVQTSGSTATSQQIKIVAVGALARLARAVYTGNFPHQFDGTRIEALLSTVLFDQWSEVPTAETWNAYDPAVQWEDAENSGLGEIDTPGDYDLHSESNLNDTVYNLASRFATSGLGYLYEDAQGRIGYADSTHRSQYLSTYGYVDLDGNQAIGPALSIVKRAGDVRNAITVGYGVANAEVSDEDAASIALYGQLATTIRTTLRNQNDAEDQAAFYLLIRAYPQFALRQITFALGNTEIDNSDRDNLLNVFMGMPLNIVNLPSNMVNGEFQGFVEGWTWTAGLNRLELTMNLSPIAFSLQAFRWNSVPMVETWNTISPTLNWVNATIVA |
| Ga0214917_100060676 | F002241 | AGGAG | MGREEVSRPHSIRYIRQLMEWGFDKEFIARDCGINLASLETRLRRAEERERNGNQGTEPRTGSCKSDS |
| Ga0214917_100060678 | F000545 | N/A | MDENRFRWALGISKMRTDAHPFICSSCKLVTPHIELNRYETSDIPNAPEEVWLIECQRCFMQRIIYPADRVASKEDDIVRCDKCGNWKMKAGNCRVCRLAAGFEKQMVQYWNGNATMERPYDDANL |
| Ga0214917_100060679 | F000645 | GAG | MSNYLDDYVSVQDRLKEFINAYPDYRIKTHTLAESLVANCDVYIVKVELYRTEADPNPWTTGLSSESKSKQYALELAETGALGRALNLAGFFAKPTGAPKKPIQTTKPELASFIKEQRPNDPEPIVWDVSAIAEKLGAEVVDEIPLCQYGRGPMILKSGSKDGKEYRGYVCPHKDSEKQCAAKWMKIGSDGHWVFQK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |