| Basic Information | |
|---|---|
| Taxon OID | 3300022752 Open in IMG/M |
| Scaffold ID | Ga0214917_10005625 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 13332 |
| Total Scaffold Genes | 24 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 18 (75.00%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (66.67%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Georgia | |||||||
| Coordinates | Lat. (o) | 34.2611 | Long. (o) | -83.95 | Alt. (m) | Depth (m) | 2 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000468 | Metagenome | 1102 | Y |
| F002044 | Metagenome / Metatranscriptome | 599 | Y |
| F002162 | Metagenome / Metatranscriptome | 588 | Y |
| F007469 | Metagenome / Metatranscriptome | 350 | Y |
| F037698 | Metagenome / Metatranscriptome | 167 | Y |
| F105165 | Metagenome / Metatranscriptome | 100 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0214917_1000562510 | F105165 | GGA | MTAKDDMLQLAWIFMGLGIGAWIIHEIKETAFQNGYWKGRADGWNMHRRMAETKRKSDEVFDYDKQN |
| Ga0214917_1000562512 | F002044 | N/A | MANTRKPIKRKKINRRVVRQTPEPLTKIDQHYMALHECYKAARKAGFTPEHAFWLMTEHKTFPDWIVGDGGIIPFMDPTDDEDDD |
| Ga0214917_1000562518 | F000468 | AGG | MTVWTPDWKLTVAGVDYTDIAISDIVHQAGRDDIYTQPNPSYLQVQLVALSGQTLPFDINDSLSLQVKNSSGSYVNLFGGDIVDISVEVERSGNLTAIISYTLLAMGSIVKLAKEIWNDNIAQDEDGEQIYEILSSVLLGSWNDVPAAATWATYDPTETWANAVNLGLGEIDRPGLYTMQHQPNTTDIIYNVVSDIANSAFGYIYEDNEGNIGYADADHRQDYLIANGYVDLSANHAIGSGLRTTVKSADIRNDIYLNYGTNYNSQKTSTSASSIALYGYKAETINSRIHSAADAQEVADRYISLRAFPQPVFDSITFPITNPEIDDSDRDNLLNIFMGMPLNIQDLPDQISNGEFEGYVEGWRWSTRFNELFLTINLSPVSFSQVAMRWNSVPIGERWNTLSNTLTWEYATIVA |
| Ga0214917_100056255 | F037698 | AGGAG | MCDSHDQGTHQIDWDYQNELRKQWLLDNPDSNYQGWMSI |
| Ga0214917_100056256 | F002162 | N/A | MPNYEYECPGEEIAIVMELPMDHKTPNCQVCGAIMRRVYTAVPAIFKGNGWAGKRG |
| Ga0214917_100056257 | F007469 | AGGAGG | MSELQIIDGSGLTATFTDDGIKVEPSTIRCDTCNDDRLLHEGDLLRCYVCHTINRIPYNA |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |