| Basic Information | |
|---|---|
| Taxon OID | 3300022752 Open in IMG/M |
| Scaffold ID | Ga0214917_10001095 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 35345 |
| Total Scaffold Genes | 50 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 40 (80.00%) |
| Novel Protein Genes | 8 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 6 (75.00%) |
| Associated Families | 8 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Georgia | |||||||
| Coordinates | Lat. (o) | 34.2611 | Long. (o) | -83.95 | Alt. (m) | Depth (m) | 2 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000166 | Metagenome / Metatranscriptome | 1810 | Y |
| F001182 | Metagenome | 755 | Y |
| F001424 | Metagenome / Metatranscriptome | 698 | Y |
| F003407 | Metagenome / Metatranscriptome | 488 | Y |
| F003662 | Metagenome / Metatranscriptome | 474 | Y |
| F011843 | Metagenome | 286 | Y |
| F015839 | Metagenome / Metatranscriptome | 251 | Y |
| F074415 | Metagenome | 119 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0214917_1000109517 | F000166 | AGG | MSNIPTPEDAAHFAQSVRKWQAILNLGDWRIEKGLKPAKNAMASVEFNEGARLATYRLGDFGAEKITKESLDQTALHELLHVFLHDLMTVAQDPKSSQDEIETQEHRVVNLLEKLLIKDSHEWT |
| Ga0214917_1000109525 | F074415 | GGA | MPSRIPDGLTVAQTSRGIVITSDPAKVRIIDQGSEKDVGMALFGYAHDQAKGFDNVAVAMDRSGIPVAELAIKPGQERRAMRAASLLAPDTGSTNMMSRGDVVNTRLRGLLD |
| Ga0214917_1000109529 | F003407 | N/A | MTDKELPPAIDACLDLVNDLLHPEVYGHAIPTEVKARAFVVKTMLERLKARMETSTWPEA |
| Ga0214917_1000109530 | F001182 | GGAGG | MTTTPIYPDGLYRFDCTIEGVDLICFLEYSPEEKGSTDSYGAPYEPDLEEGMMLNNAYIAGTVVDIAHMILQGLVDHIEVAALEKYNDR |
| Ga0214917_1000109531 | F015839 | N/A | MKNTTFTASVASDLFNAGYSCDGHPFIAEQFYVVIENAAGKRFRHQATFNGTQQVICEETGDACFPDLRAEASAKADRLAARVNAALEAGKFISPTFWDEVDPAYGSDEYVDQGTEAKRLFAEKAAA |
| Ga0214917_1000109536 | F001424 | GGAGG | MGQEVRQLSTGYPQSDKWVEDERVFCHQCSKAVEVDMKQSMPAEQMERHRKVNSKPLQWMFDEAKIRNGWATITWSEHQCSQTGLAAFPTDVKHRCHLFQAKATAVESESWWLT |
| Ga0214917_1000109539 | F003662 | GGAG | MKSKLATVIFKGQEWVVIDTAEEKDGKVFCTLMSPDGTTVLHAWVDINQIVGII |
| Ga0214917_1000109540 | F011843 | GGA | MNTQMLIKVRQLFNVDYVPRSTNRHNQLQYIKAIRLLGDKWLIHKNNEVQKIPQ |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |