NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0228703_1060729

Scaffold Ga0228703_1060729


Overview

Basic Information
Taxon OID3300022747 Open in IMG/M
Scaffold IDGa0228703_1060729 Open in IMG/M
Source Dataset NameFreshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 29-17_Aug_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)980
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)33.9263Long. (o)-83.4268Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000311Metagenome / Metatranscriptome1326Y
F001043Metagenome / Metatranscriptome794Y
F003422Metagenome / Metatranscriptome487Y

Sequences

Protein IDFamilyRBSSequence
Ga0228703_10607291F003422N/AILAMTKYSKYTWVCTGTCDALIEYTFKDNYILPNLVQCPCHSMCTLVSVEDATIQPTTTEEEKMETATIGSDALHSPEVEYNPNLLVTYKVLHGYSDPEYTTSKVTSLEWDLHNGRQSQKRVGLLESNINTVKNIILESYADSEDQETLQAIAEALGIELTKDVEFTATIEVSGTITLNLLEDYDLESEITDALYVDANHGNIQIDDTEVCHVREAY
Ga0228703_10607292F000311GAGGMYFELTAPDRLSMEMAYWDAQMMGLDPMALTPLTFNIGTGSIEKVSRIRDKYNLIESYTSDYEPTGYTGR
Ga0228703_10607293F001043GGAGMSDYKDGFDDGYKFAREEIMEKLAEIDIMDIDSWILD
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