NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0228703_1003542

Scaffold Ga0228703_1003542


Overview

Basic Information
Taxon OID3300022747 Open in IMG/M
Scaffold IDGa0228703_1003542 Open in IMG/M
Source Dataset NameFreshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 29-17_Aug_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7929
Total Scaffold Genes27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)24 (88.89%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)33.9263Long. (o)-83.4268Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022196Metagenome / Metatranscriptome215Y
F067728Metagenome / Metatranscriptome125Y
F090382Metagenome / Metatranscriptome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0228703_100354214F090382N/AMTRIDPDLNPLEVMLVIEDLRKKGVERYTLTKGNNCIWAYYGLVNSYYIFKDSRLVDIQY
Ga0228703_100354222F067728AGGAGMARVTLNQALFKVVLTEYDRYSGRKHWDTWYFDNEAEARQAAIDYNTKHNTAASAPDWYVRADYVGSVG
Ga0228703_10035426F022196AGGAGMKPGTTIPSSTGGTITYTKTGLVHSAGKAYSGKIAQQEAKATKSKKG
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