NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0242665_10032053

Scaffold Ga0242665_10032053


Overview

Basic Information
Taxon OID3300022724 Open in IMG/M
Scaffold IDGa0242665_10032053 Open in IMG/M
Source Dataset NameMetatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-17-M (Metagenome Metatranscriptome) (v2)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1299
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008143Metagenome / Metatranscriptome338Y
F019446Metagenome / Metatranscriptome229Y

Sequences

Protein IDFamilyRBSSequence
Ga0242665_100320531F019446N/AEHQLDLRGYVMTATDAENQFLENMPGEIKEILRWHADAQSRGQASQSIADFAGRFLGGMYEDGAVLPTNLSASAPEVLALVLLQHRSNPRSTGAWLNLGFALRRGALYRTQDPEETNRARLQSAVQAFDRALELDSDNNGKNIRAWTGMSLAYHMLDMYEKELECCARALESDRSDPKLWLLYSFALKSAGREDEALSTMNDAYEAYIRAGKPDELREVFADVQSTTQRPCRQRMAQ
Ga0242665_100320532F008143GAGGMKSVGGIHRTRLAASKVHRHLVKEARRSVQELGWQVPGNDVSPTLVGAIPLPFPVPDSFETAFGYRGNLRFVQFGYTAGSLQFGYSDGGDDLPSDGSLWSWFLHHPAVAPYLPESRYLTLYGKFPSGTERPPLEQIMRRGAELPTCHCLLLDRRDRRAYVSERDQAMILFALMEPDEGDAHNVFVDGMLMSPGSED
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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