NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222623_10297522

Scaffold Ga0222623_10297522


Overview

Basic Information
Taxon OID3300022694 Open in IMG/M
Scaffold IDGa0222623_10297522 Open in IMG/M
Source Dataset NameGroundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_coex
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)620
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.9201Long. (o)-106.9487Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F037596Metagenome / Metatranscriptome167Y
F070769Metagenome / Metatranscriptome122Y

Sequences

Protein IDFamilyRBSSequence
Ga0222623_102975221F037596GGAGGMAVHRRPPVEGPPFELLVFRGDDWVSGDGVPPLGRWHYARFEWAKAHPDDFSLGGDVLDLLRERAAYRRALLP
Ga0222623_102975222F070769N/AGLGPVMARHRRPPLTVVPPPELRSFDPDEWPAGEWWQSCELWGAARMAFVKAHPGSELGSALDVLREQHRLYEAHRRAEWEAGLNGRAS

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