NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0236342_1014512

Scaffold Ga0236342_1014512


Overview

Basic Information
Taxon OID3300022592 Open in IMG/M
Scaffold IDGa0236342_1014512 Open in IMG/M
Source Dataset NameFreshwater microbial communities from thermokarst lake SAS2a, Kuujjuarapick, Canada - Sample Summer S3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterLaval University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2350
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Thermokarst Lakes Summer Vs Winter

Source Dataset Sampling Location
Location NameSAS2a, Kuujjuarapick, Canada
CoordinatesLat. (o)55.1491Long. (o)-77.4866Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025204Metagenome / Metatranscriptome202Y
F070989Metagenome122Y

Sequences

Protein IDFamilyRBSSequence
Ga0236342_10145122F025204N/AMSEIDPISTARELATHANDIEHLQADMDKMVGEMREIKEAIQSIQKTLVEAHGGWRMLLGIGGAAALIGAIFANLFQGWWSH
Ga0236342_10145123F070989AGGAGMTMQYDVKSAYAGSFPAQIYTGRTRLKSIVFIGNGTGGTFTMYDGTDTTGPIIYQFKYSTAVQPFQVLVPGEGILCQNGIYVVGTTLSAMSITYG

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