NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0236342_1008739

Scaffold Ga0236342_1008739


Overview

Basic Information
Taxon OID3300022592 Open in IMG/M
Scaffold IDGa0236342_1008739 Open in IMG/M
Source Dataset NameFreshwater microbial communities from thermokarst lake SAS2a, Kuujjuarapick, Canada - Sample Summer S3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterLaval University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3403
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Thermokarst Lakes Summer Vs Winter

Source Dataset Sampling Location
Location NameSAS2a, Kuujjuarapick, Canada
CoordinatesLat. (o)55.1491Long. (o)-77.4866Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012753Metagenome / Metatranscriptome277Y
F024038Metagenome207Y
F034484Metagenome / Metatranscriptome174Y

Sequences

Protein IDFamilyRBSSequence
Ga0236342_10087392F024038AGGMDPALEAISKNIIYELWYSVAESIFQRVCQVTELNEEQIAALREVALRPNDFHIRITDN
Ga0236342_10087393F012753GAGMAEEESQALTTPQENELSMLTHSIIEWRRLKELNDGRKQEMREANTKMKALEEIIVRVMKAHNIGALDLKNSGGRVLFKKSKRSAGLGQKNMEKLIAEHLESQEKAQNLMKYIQEHREVVIKESIAYEKLD
Ga0236342_10087395F034484GAGMTEFSSSDIVLLFLIAILTFYLVRTFYFTPKYPRVDEGFYGGVARGSGHPDCLRTLPEGSQLLDLLMGKGVDSVSPGINESSADYMELQLILSKMGCLKKDIMSPSGIVEATRYQAFNTSHDRIAVAEVCAMCFSQTIPSRDLDIIFATWRDRGKVLLLKLCTEANLTEQQVVTCEKLFAKAWEDVYDIAKSQCLKTDFKLQNGGSTGGDVGAFEPPELKDARSYENKYGGLSASGWNGA
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