NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0212123_10003316

Scaffold Ga0212123_10003316


Overview

Basic Information
Taxon OID3300022557 Open in IMG/M
Scaffold IDGa0212123_10003316 Open in IMG/M
Source Dataset NamePaint Pots_combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)34235
Total Scaffold Genes31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)24 (77.42%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameCanada: Banff, British Columbia
CoordinatesLat. (o)51.1699Long. (o)-116.1578Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008143Metagenome / Metatranscriptome338Y
F019446Metagenome / Metatranscriptome229Y

Sequences

Protein IDFamilyRBSSequence
Ga0212123_1000331620F019446GGAVTDAENQFLENMPGEIREVLRWHADAQSGGQATQSIADFAARFLGGMYEDGAVLPINLSASAPEVLALVLLQHRTSPRSTGAWLNLGFAIRRVALYRTQDPEETNRARLQSSVQAFDRALELDPDNNGKNIRAWTGMSLAYHMLDMYEKELECCARALESDRSDPKLWLLYSFALKSAGREDEALSTMNDAYEAYIRAGKPDELREVFADVQSTTQRPCRQRMAQ
Ga0212123_1000331621F008143GAGGMKSVGGIHRTRLAASKVHRHLVEEARRTVQKLGWQVPEDDMSATLVGAIPLPFPVPESFETAFGYKGNLRFVQFGYTAGSPQFGYSDGGDDLPSDGSLWSWFLHHPAVAPYLPDSRYPTLYGKFPSGTERPPLEQIMRRGAELPTCHCLLLDRRDRRAYVSERDQAMILFALMEPDDGDAHNVFVDGMLMSPGNEDYKVAPPPGVLDEFRRFMDSRVQAFEGA
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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