NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0212123_10001050

Scaffold Ga0212123_10001050


Overview

Basic Information
Taxon OID3300022557 Open in IMG/M
Scaffold IDGa0212123_10001050 Open in IMG/M
Source Dataset NamePaint Pots_combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)81017
Total Scaffold Genes81 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)62 (76.54%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameCanada: Banff, British Columbia
CoordinatesLat. (o)51.1699Long. (o)-116.1578Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001399Metagenome / Metatranscriptome705Y
F001867Metagenome / Metatranscriptome624Y
F003278Metagenome / Metatranscriptome496Y
F006802Metagenome / Metatranscriptome364Y
F013683Metagenome / Metatranscriptome269Y

Sequences

Protein IDFamilyRBSSequence
Ga0212123_100010502F001867GGAGGVTGVSPDQLWFQKYLEFHCDDCGSDTGFRSRRRTFSERYLLPIFLLQPVRCAECFRRDYRLVFMPVKDRLPEAAKKAPTNVPRSDRNVA
Ga0212123_1000105020F006802N/AMPLILCLTVVLSVGIGVLAAYGAVIGILEACGQASQMRPSEARPRLVLVPTQNHASGD
Ga0212123_1000105050F013683AGGAMELKDHDFIRNPVVQNQIFFLESKCAFCSFSMLTRSIEELVELEKLHRNQCGSSNAAA
Ga0212123_1000105055F003278N/AMTYGSVGLVCALPYCEWEQAMLKISLIDNAGRRRLIVEGKLIAPWAAELRSVCEKARADLRGRELIIEMKHIATISQEGENVILELINEGIKFRCDGVFTKHVVKELTRRAGRNVGEVKR
Ga0212123_100010509F001399GGAGGMKLNDSFTAYDIAEALQGETGKFEVTSPNGERYFVTCQPGHSIVSLEWAGNEPNQQPFLVRKVAQPVAIEGRKKSSA
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.