| Basic Information | |
|---|---|
| Taxon OID | 3300022557 Open in IMG/M |
| Scaffold ID | Ga0212123_10000642 Open in IMG/M |
| Source Dataset Name | Paint Pots_combined assembly |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 109222 |
| Total Scaffold Genes | 109 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 80 (73.39%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 7 (100.00%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii) |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Canada: Banff, British Columbia | |||||||
| Coordinates | Lat. (o) | 51.1699 | Long. (o) | -116.1578 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000238 | Metagenome / Metatranscriptome | 1494 | Y |
| F000359 | Metagenome / Metatranscriptome | 1236 | Y |
| F000912 | Metagenome / Metatranscriptome | 839 | Y |
| F002319 | Metagenome / Metatranscriptome | 571 | Y |
| F004416 | Metagenome / Metatranscriptome | 439 | Y |
| F004553 | Metagenome / Metatranscriptome | 433 | Y |
| F023648 | Metagenome / Metatranscriptome | 209 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0212123_1000064229 | F000912 | GGAGG | MSLDGFVRCTCIRNGKAKPHPFPDRRIVDESAEPSLTGDPSEQDGKAHDQWLGESCEHEGSLLSLFLGNITRVGNLRSFLRTCSALPDRRFPIFLEKALYDGTHTGDWISSKIGEKLLKEVDTVLHSSHILADSEKSSSTI |
| Ga0212123_100006423 | F004416 | GGAGG | LLLTSTQVIPRSKGEEEDSALLRGKMEELNKNIVRLISETEKLIQESKQLSERIKSFRRKERTTVGAAA |
| Ga0212123_1000064237 | F000359 | GGGGG | MSGQVVLYFEDQADALRFALAAGSVMAGDGSSATDDLLHGTARVSRIRLDAANAGRLKKPTPERAA |
| Ga0212123_1000064249 | F023648 | GGA | MLRATLISAFVVAALLSQAQVSSSCNSVSFKVTLHVSEDFEKELGGGLLFRVKSEKQPGWFVDIVPAEATSQDYIYPVNLPLRFNPNQTLGPGYGESVRSSLAYTHEMQFLLYKPDYDRVSSLIGNVLSSYQTSDPDKALSDYASAARKAKKGMLKVAVSSYKTNNATGALARIKLRVQITTPLEFPYAPGLTPMPASCPADIDLSVR |
| Ga0212123_100006425 | F002319 | GGAG | MTSEVVNLQVTASIPIDCDFWSEDDGWKGLCKSLSVTAGGGSFEDAKKTMATELQAYIERILREHPKRSANLFVS |
| Ga0212123_1000064268 | F000238 | AGG | MSPKPHPPRWSGIPLRVLLVTFLGTLISFSVSLFLGIVGTGAVSVLRGVHANMTIAYRHIALPTAAVAGSIIFVLTLTMEIRHYRQSKTLASIERVS |
| Ga0212123_1000064280 | F004553 | AGGAG | LNLRFGKTAAATVMGAALMFFVAAPRVHADDRSKCQHAVEKAEARLNKAIEHNGERSREAEDRRRDLNAERQRCWEEHHQWWNGKEHRWETEQSWDHDHR |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |