NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0212123_10000429

Scaffold Ga0212123_10000429


Overview

Basic Information
Taxon OID3300022557 Open in IMG/M
Scaffold IDGa0212123_10000429 Open in IMG/M
Source Dataset NamePaint Pots_combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)139997
Total Scaffold Genes144 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)68 (47.22%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameCanada: Banff, British Columbia
CoordinatesLat. (o)51.1699Long. (o)-116.1578Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000116Metagenome2132Y
F001662Metagenome / Metatranscriptome655Y
F011257Metagenome293Y
F013578Metagenome270Y

Sequences

Protein IDFamilyRBSSequence
Ga0212123_10000429100F013578N/AMKIDFRLTTAAVIAAILISPIVARAGSRSHPLSEDAALELLQRTLKRDRVYEKRISLDCIAYGTEETTNTYFEFVLREIHNAKCAGDPETSPAIDRYRVYRHSGKIQQWGAAEDTWQPYKRAAN
Ga0212123_10000429106F000116N/AMPKHPETTISTATRQIRPPPLSQHLREFASRRDAWVVLARNMIPVVGIYVFGWSAAVAVFNYWFDGLTALTAIVAALVPRALRETQSGKDHVTLVGNVVRGVFVWLLLVGIVALPYWIVLIPLHDLLLGNELRRELAHSPALWFTFGSLAASHFWKAFRMGYDTMPDKELKQRARWDLYLLILRAIAMFFMAAHGLYFILVPLMALLLSYLEIWPERAIGAVFGDPSRLWEYDPGDPTSNKRLP
Ga0212123_10000429114F001662GGCGGVEGIPSEGVATKHIIAMKFSTEAIVAAVVAVVFVLLSFGAIAREQGEPARVGHNAQNAYVAASNANPSDTDVLGVY
Ga0212123_1000042983F011257AGGMRLPGLGWGGIAMEAGLGRKRLVSLRYLQLGKIRAAARVGCPF
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Institute for Fundamental Biomedical Research
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