NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0212123_10000058

Scaffold Ga0212123_10000058


Overview

Basic Information
Taxon OID3300022557 Open in IMG/M
Scaffold IDGa0212123_10000058 Open in IMG/M
Source Dataset NamePaint Pots_combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)353395
Total Scaffold Genes314 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)265 (84.39%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameCanada: Banff, British Columbia
CoordinatesLat. (o)51.1699Long. (o)-116.1578Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003850Metagenome / Metatranscriptome465Y
F082502Metagenome / Metatranscriptome113Y
F091666Metagenome107Y
F092608Metagenome / Metatranscriptome107N

Sequences

Protein IDFamilyRBSSequence
Ga0212123_10000058121F091666GGAGGMMTAPNHSPAPWAYEYSPYQGRNGEIPAFEVFDADCNKILDTNEDTPCELQEANARMASSAPRLLASLITCANLLADYDESDGEEGEAYREALAAIHEAIGRAA
Ga0212123_10000058125F003850AGGGGGMTLPPTYQLHELGPQAQAMSRNCGNDKMAMILQYVALGSMIVMAGVAASQVLKDVFGSPGHDRGRGRSR
Ga0212123_10000058173F092608GGAGGMSPFSLAFLAMLIAFLAITLAAAVRSLWLRFHPPGSSKATSEWSSGKSTASDGLLLLGVAMAWYNVSSGWIAQLTIYPIYADISVYGPQAFNAFSQGYLSRLPIIILPAGVMCLSWALLLWLPCRNVPPSIVWGIVVLCVAFVALTPIPAGAQGQMHDEGFSNDLHARLLWSNGIRAIIFTAIGFLSLAATRRRWSSNECLGA
Ga0212123_10000058188F082502AGGMNLLDLQARLRRLEELSRGLAREVSLWKECNDPLLYLERKAYLNGIMDALTGVETARVTLARVRQRLGDKIV
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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