| Basic Information | |
|---|---|
| Taxon OID | 3300022557 Open in IMG/M |
| Scaffold ID | Ga0212123_10000019 Open in IMG/M |
| Source Dataset Name | Paint Pots_combined assembly |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 501756 |
| Total Scaffold Genes | 481 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 340 (70.69%) |
| Novel Protein Genes | 8 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (50.00%) |
| Associated Families | 8 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii) |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Canada: Banff, British Columbia | |||||||
| Coordinates | Lat. (o) | 51.1699 | Long. (o) | -116.1578 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000646 | Metagenome / Metatranscriptome | 962 | Y |
| F000780 | Metagenome / Metatranscriptome | 895 | Y |
| F000873 | Metagenome / Metatranscriptome | 851 | Y |
| F001734 | Metagenome / Metatranscriptome | 644 | Y |
| F006434 | Metagenome / Metatranscriptome | 373 | Y |
| F006805 | Metagenome / Metatranscriptome | 364 | Y |
| F008261 | Metagenome / Metatranscriptome | 336 | Y |
| F008699 | Metagenome / Metatranscriptome | 329 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0212123_10000019144 | F000873 | AGGGGG | MKDIHEVLRRKQAQYTQLGKQIEMLQQAAEKLREVAPLLAENENDDDSAVLAEVDDENQGAMAAKAGAQSATPAKPARGATPRWP |
| Ga0212123_10000019203 | F008699 | N/A | MPLFYTDSVTLAYADVEGAKRWWIEAFDCKVARVPPDWDCQLPSDVALQLPGHDAPTILLNAKAEVQQAGFDRLSPVASVIFCNKLKKGHEHLTSRGVFPGPIQDGGDTQFFEIRDGEGHLIEVCKEP |
| Ga0212123_10000019255 | F001734 | N/A | MRPKFPTVLCSSEIVVLRFVLRFALCALLLISLSPLRLSAQDDLPSLGDLAREMRKSKAQQPTQQAPDPLHPVIDNDNLSQVMDDAKNARPVKSDKTVFSIDPSGALKVSSPDVTCSLSFNARASALLVKPVLVENLPLTELLKLDGPGSIQDESLQLEVFNGTDWDLREITIGLTLERKPGENAELAARARVILAAEGLAPPAVERHSDVTLLYHLKAEAKPFSTTAFRENIGITPGPDEDWRWSIVEAKGIRPSQAPGAASSQREPLFAMPSSLLGSDGNEEETLPTVIPLAPSAPASSDKSIPDRSHFDSAPTPPSPQQ |
| Ga0212123_10000019256 | F008261 | GGAG | MKIWHLAYAALGIAVARWVFKRQPMTISDPITRFRTSGLL |
| Ga0212123_10000019263 | F000780 | N/A | MDRDLEDAKVTRTTQKSPYVSGHLMCRSALWGVAGFLGCAYFAWISFRHVTQNEYEWPHDPWSAATYIVWIILLAGLAYDTRCLRERLFFAVLVINFVIGCGLTLWHNVPVGDVRTARMVTGGLWTLAGLLSLTTLKGASETAGRTVH |
| Ga0212123_10000019308 | F000646 | AGGA | MLLGLVLVVLSIGALAKSKDDVRDVTGCLSKGDSANEFLLTGNNGSTWEVRSDSVALADHVGHTVRATGAVTHAKMHNMKEDAKDTATDSGMKKSNEEHGHMTITAIKMVSDSCK |
| Ga0212123_10000019358 | F006805 | GAG | MPIQPTLERESPEQSPTKPATQPVDAAATGAPVTDFHIGEEFGTAKRTLPPARIVMICMIAIAVIVGIFAFKERAKPQGAGAINFVSSVEVPDQNIILAAITFALRNTADKPLWVHTLKAHVVTADGKTYDDEAASVVDLDRYFQAFPPLKESSEPPLSPETKMPAGTETKGTIIVSFPISKEVFDQRKSLSVSIQPYDQPLPIVLK |
| Ga0212123_100000197 | F006434 | N/A | MRRFCYFLFLLLACSYGVGKDESVDELKAHFERARPEDRPELGIRIAQHQLRNADKLYVEGKIEQAREAVEDIAGYSEKARDAATQTQKRLKNVEIDARKMADKLRDIKRTLAVDDQPPVEQAIRRLEDVRTFLLKEMFAKKEKK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |