NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0212088_10013015

Scaffold Ga0212088_10013015


Overview

Basic Information
Taxon OID3300022555 Open in IMG/M
Scaffold IDGa0212088_10013015 Open in IMG/M
Source Dataset NameAlinen_combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12545
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (81.82%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake Hypolimnion → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameFinland: Lake Alinen Mustajarvi
CoordinatesLat. (o)61.5637Long. (o)22.044Alt. (m)Depth (m)4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029327Metagenome188Y
F037029Metagenome168Y
F056283Metagenome / Metatranscriptome137Y
F074332Metagenome / Metatranscriptome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0212088_100130152F037029GGAMKHSFRIWCQEKWFEHKDELEAYQQPLPYTAREYFNRYKFWLKREYKHQQHLSK
Ga0212088_100130155F029327GGAGGMGFYKNIEIEIMEWQARGRSVEDTYIYFKDYVTHEDVVRIFARDCDEAAV
Ga0212088_100130156F074332AGGAGMTQNHLAQYNVEELQGYFSDFHKDFYGFRPRTLGSDEDWRNRSWLEAQINRIHDTMDAMKKTYSGREELRIAGWIIDEADFNDIIDPEEYARWSADADAVAYGEAQ
Ga0212088_100130157F056283AGGAGMFETVIDQLVKVTLTNQPVKTEFYNGTLFVHKITERQARRVFHRLSETLGLGSVQVSPIGNTGEYAFDFVANKQQEDFSPFATVNS
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