| Basic Information | |
|---|---|
| Taxon OID | 3300022553 Open in IMG/M |
| Scaffold ID | Ga0212124_10018734 Open in IMG/M |
| Source Dataset Name | Powell_combined assembly |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 4492 |
| Total Scaffold Genes | 6 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (50.00%) |
| Novel Protein Genes | 2 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
| Associated Families | 2 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Archaea | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii) |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Canada: British Columbia | |||||||
| Coordinates | Lat. (o) | 50.0621 | Long. (o) | -124.7214 | Alt. (m) | Depth (m) | 150 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F007302 | Metagenome / Metatranscriptome | 353 | Y |
| F074258 | Metagenome | 119 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0212124_100187344 | F007302 | GGAGG | MKVQKTGTIVGIVQSEDPVKIRVQVKLDEETLEQRVRPYPQSEQERMSQQMTESIAKQLRTAIPGALVMGPGFAGVSGSNLEEWLIPADQASKLSIGKRVRVSLELLDEDQTA |
| Ga0212124_100187346 | F074258 | N/A | VPSGVCLLTSLLSECRVLTWMNHSGAPSEPPCVSSTFASLEVNEVMREKQLPLFLVALGLIVLMTVPAFADPVAATSPSTGDRYAVTPISGEARAWVAGSGVVSSANLQLVVQVTNVGPNNIIFRTLSGTIRFDDKVYNIVAHGWRGDYNRVSKTCVYQGPAIAPNGARAFFIIYGHDTSDTQ |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |