NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0212091_10076784

Scaffold Ga0212091_10076784


Overview

Basic Information
Taxon OID3300022549 Open in IMG/M
Scaffold IDGa0212091_10076784 Open in IMG/M
Source Dataset NameCold Creek_combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1255
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameCold Creek Source, Nevada
CoordinatesLat. (o)36.41Long. (o)-115.74Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007965Metagenome / Metatranscriptome341Y
F025749Metagenome200Y

Sequences

Protein IDFamilyRBSSequence
Ga0212091_100767842F025749N/AMKNQMTIREIRIVLFETEKYTVIGADEMTNKESRDFLYAKDNQEEVMNVIDNGSHLLIWK
Ga0212091_100767843F007965GGAMEVKKGGKRKGSGRKKADYETKTIAFRVRVEFVEQIKKMVKDYVSARLQADA

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