| Basic Information | |
|---|---|
| Taxon OID | 3300022543 Open in IMG/M |
| Scaffold ID | Ga0212119_1000009 Open in IMG/M |
| Source Dataset Name | Indian_combined assembly |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 90203 |
| Total Scaffold Genes | 73 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 12 (16.44%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii) |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Indian Creek, Illinois | |||||||
| Coordinates | Lat. (o) | 41.6655 | Long. (o) | -87.5437 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F004953 | Metagenome / Metatranscriptome | 417 | Y |
| F023555 | Metagenome / Metatranscriptome | 209 | Y |
| F025977 | Metagenome / Metatranscriptome | 199 | Y |
| F048942 | Metagenome / Metatranscriptome | 147 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0212119_100000916 | F048942 | N/A | MIKVKELKDDVVINIQVNKSFYLMTKAASFVLLQNMDIPEKGDAYFKDIMNKEYNDLDEQQRAFYTLALLLAEIETQATRNNLYNEKEIPEPGDEGYVAPKLD |
| Ga0212119_100000918 | F025977 | N/A | MKEIFKKLADNGITPNAFYILDCVKEGIVPNTYVKASLEVTRLIKDNWLTQDLELTDKSIIFTTEIDGYFKRSKKKTSTDLLGHNFMQNIEAYVHIFPNKKLSSGKYARVPAKNLESGFRWFFETYNYDWETIFQATQKYVGEYESKNFEYMRTAQYFLRKQNVDKSWDSDLATYCEYLKDNPDDEQVHFGELIV |
| Ga0212119_100000920 | F023555 | N/A | MSSNLRKEKEREFYMQHMDAFKAIGIADPFFTIKTAFFKKGKFGRQCQFFEWELKKGEDIYIEFYDNAYDGNGRTIDIVPMNEDRALFKLKFNPYFQEEYDVIEGVDSEGKPDRKYLIPVNEMMVVLSSGQEISHSLYEKRKEDAKNDLPELQKSLSLFPDFEKEYSPKVEEVSLNEGDESVSDILMRISVEFEKLAKRL |
| Ga0212119_100000934 | F004953 | N/A | MNKSMMLVQATWQESQTFRMIPTSTDCPYVECIFDPTSNVFVVISNIKKTTLHMLPKLDEYGQPSTGSKGMKQERHKLEVFQEFYVEDKKATEELIKGFAINADSFDYKKFMKEAKKA |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |