NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0224712_10236902

Scaffold Ga0224712_10236902


Overview

Basic Information
Taxon OID3300022467 Open in IMG/M
Scaffold IDGa0224712_10236902 Open in IMG/M
Source Dataset NameCorn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-2 (Metagenome Metatranscriptome) (v2)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)839
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012619Metagenome / Metatranscriptome279Y
F039854Metagenome / Metatranscriptome163Y

Sequences

Protein IDFamilyRBSSequence
Ga0224712_102369021F012619GGAGVSPGRGRATWTLEDFTIADYGTVANSLTHGSPIGEGVVDMTMTWSGGGDVAHVRDATQGFTGRKVTGTSHISWSVTEGDFSFTADEAGQTSLVSE
Ga0224712_102369022F039854N/AVAMLPARSPTIAGSSMTVGPITPGHRHTMSRRRLLAGMGLGAVGVLGAQVASAGPASAARGPGSPRPIPGGFQPFGPGTEVFHVFGPGTGEGSTITDFNGFVGVAEVQGVGAGERGNLTWDVDNRFMTGEYVALDGHHFNATFGFL
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