NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0224508_10071309

Scaffold Ga0224508_10071309


Overview

Basic Information
Taxon OID3300022413 Open in IMG/M
Scaffold IDGa0224508_10071309 Open in IMG/M
Source Dataset NameSediment microbial communities from San Francisco Bay, California, United States - SF_Jan12_sed_USGS_21
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2344
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Sediment → Unclassified → Sediment → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)37.79Long. (o)-122.36Alt. (m)Depth (m)17
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002477Metagenome / Metatranscriptome555Y

Sequences

Protein IDFamilyRBSSequence
Ga0224508_100713094F002477AGGAMCHHEQIRQQSKHLTQGKKRRHFKVVNAYDPTIAPIIKGKNNCPAQFGRKPGIISEPATGYLFANLTPKGNPSDESYVLPLIDKVEQAIERVQQGPKRAIHSLAGDLGVNDPVVRQALHERHILSVGIPKTVEPINPHPSAQEILDILNEADLNRKRTPLQVQLASASGYSRPVVESHIATLLSRGAGTVRYKGLEGAVVQQGMTVMSYNGAVLVRIRQQKMTQRAQKFRRLLGLKSPKISKINPQKN
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