Scaffold Ga0181351

Basic Information
Taxon OID	3300022407 Open in IMG/M
Scaffold ID	Ga0181351_1000364 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM15.S.D
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Basic Information

Taxon OID

3300022407 Open in IMG/M

Scaffold ID

Ga0181351_1000364 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM15.S.D

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Draft

Scaffold Components
Scaffold Length (bps)	12627
Total Scaffold Genes	14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (78.57%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

12627

Total Scaffold Genes

14 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

11 (78.57%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (85.71%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location Name	USA: Michigan
Coordinates	Lat. (^o)	43.1881	Long. (^o)	-86.344	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Michigan

Coordinates

Lat. (^o)

43.1881

Long. (^o)

-86.344

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F000857	Metagenome / Metatranscriptome	858	Y
F001059	Metagenome / Metatranscriptome	790	Y
F003521	Metagenome / Metatranscriptome	481	Y
F004695	Metagenome	427	Y
F005087	Metagenome / Metatranscriptome	412	Y
F006264	Metagenome / Metatranscriptome	377	Y
F040590	Metagenome	161	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0181351_100036411	F006264	N/A	MDDHATVFRQKLSAQAEVCARKTLEWLQKDLQGDRELAPQEVYYLASAADILLTMRDLYGKK
Ga0181351_100036412	F001059	AGG	MATYDIDALKEDLPTAKELAQFVYDKTSIALDLVGKPKDEQYQVAKNALEGKKIPSEYQTDLNPYIDRKELIPVDELKPLPPRDKSLPDPDSQVHFFGATNMPHPLDPQSDRKVHINFRKYDNGVVTFQVMGPMEQVAIGERINKFGQKQPEKYSWIDPRTEETVLRRADGTFTEKGRGMYAYCIGEKGGGIWSLIDRELLNIVQKNVTNPWV
Ga0181351_100036413	F040590	GAGG	MSYGKVISGGKAMTNGLTKGINNKLKGFEESHKRSAMLATAVGKTFNQNPLSDNHLNDINVAAAKKFTVPKLPKSV
Ga0181351_10003644	F005087	AGGA	MALYIQSANSLVSRVAQWVGAIPSTVGINATAFNSGTGVITCSSNPTALVLIGDFIGPNIMGPFAAVTAVSSTTITVNDPDGTWSSVSLPTAILKLPTSSSLEIQSCIQMAELKMRTIELPALRSNPYDPDEPTILTTNAQGMAPIPADMCFPILFFQESAPSNQPPGATALGPWIVYDRVGDREIIRRRMIDQLYIRPFGVPRVIRASFSEVGPNYVFTPNPGENVTIKAYYQKTFPFLFSPTADPDYPVVQNNGILASFPEGYLYGTLWAYYDKNKNVEEAQKWIGRFDDAYGLIEDQNYKGKWRGGDQHLTSEFQPRDYRYSFK
Ga0181351_10003645	F000857	GGAG	MTDDDVKINEEYYSKGILEAGVDGVFRHNDKLFNEVKSGTWSQTFKTPNIDYKVGAVNGVRYVQYDQKNVEEVRQFCKERREFHKVHGTDNPFFAGTAHMMQLPKCFAHEISSKWFNNRPWELIKQDKQDKILFYAIVNEHYSDFVCHPSGKIPIPYNPAIPTK
Ga0181351_10003648	F003521	AGGA	MKSLVLNIREYFNRRTRSSDASKESDVTRKTLVIENGECASRLMKNEDFALLFNLYRFDLLGRLEECRTDPERIENAFNVAGVRDFIGFVEKTEYLGKVAKKTNA
Ga0181351_10003649	F004695	AGGA	MLDKQNIIVEYIEAPAGNKGIVFQVAHEVYLKMVDYLRLTQAKNTFNRLSDYHYLNIAVSNSTEPIRGLDYIHPVVTPGVDYATAIITKCLMPNGKVNFEFERFSEMDSEQSNQATEMVKYMINSKNDSYAVIRDWAQDSLLHKNGIVMVSPVREPITQYKEVEGTKDQLRVFETMAAEKGLTVKRQNMRKIDVDLQGVMQEMVESEEAPIDTAADEMSSAIQANTIYRAKYKMTGFSTSVRIKHVAQHYFVCNPTIPGIQDQDFVGFYDPMTIHECKAQFPYVDLEKLAEHAAYGPAGAYQAGALENDLALHARDSTPVPGQGVIASAGADRYSRVIMLTTAWIRKDVDNDGEEEIVEVCFSGSYVLHVKEVDFIPLAAMCPKPITGNFFGYSLAERLVPMQEYATSIARAEMSFAMQASTPRIGVNPEFIDAEEIQRGVSAMFILDRKFDPSKHIYEFGAMQGNLAYVQSSMQRFESDKMAMIGMTSPNDVMNPEVMKDGNSGFKLQLAMGPNQLIQDEMVKNCAIGLRDMIYIVWKTLIQYSDDYNIQQLAGVCGKGKPFMDAISMDNYEFIDRKLINIDLALGFLSDENRLTRQQLIAQAQQQFSQLMMSLDPSVPELFMKARRPFEDTLRVLGVKDVDAYLPTLEEAAKIIEAKSKQGPSPEQQEIQSKTDLNKAKTEETIANTLFTQKKSEDIDTDNMFEALAAKRGKLTSVQV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0181351_1000364

Overview

Ecosystem & Geography

Associated Families

Sequences