| Basic Information | |
|---|---|
| Taxon OID | 3300022227 Open in IMG/M |
| Scaffold ID | Ga0187827_10006088 Open in IMG/M |
| Source Dataset Name | Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014_SV_150_PacBio MetaG (Illumina Assembly) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 13957 |
| Total Scaffold Genes | 32 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 21 (65.62%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Pacific Ocean: Eastern Tropical North Pacific | |||||||
| Coordinates | Lat. (o) | 18.2 | Long. (o) | -104.2 | Alt. (m) | Depth (m) | 150 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F007138 | Metagenome | 357 | Y |
| F008913 | Metagenome / Metatranscriptome | 326 | Y |
| F089414 | Metagenome | 109 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0187827_1000608822 | F008913 | N/A | MLSNGNVLWTCDNCGRTAEVSCPDSNAVALTCQCDMKCHPECNTDWYSKGLYWDRIPMENRERYRKERHNQYE |
| Ga0187827_1000608826 | F007138 | GGAGG | MIDKTIKLTGEYPSDFKPSVPVQEVQQFFEAHNFFDGRMIGGSKSHYHKEHPDDLIVFNANVLMPGYGKVWYGDLNLTEDYLVLREIAQNLNTDLYVLWESDGRFGLEMKPLNELFDKAVWNTSEDNPTKEWYKNKMEIK |
| Ga0187827_100060886 | F089414 | AGGAG | MTKKKKQSFHIENKLTQYELKDGTKYWAKDDENALLYRNLILKSKGPEVAGIFTNGMLFKEVGVD |
| ⦗Top⦘ |
 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |