NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0224506_10003845

Scaffold Ga0224506_10003845


Overview

Basic Information
Taxon OID3300022221 Open in IMG/M
Scaffold IDGa0224506_10003845 Open in IMG/M
Source Dataset NameSediment microbial communities from San Francisco Bay, California, United States - SF_Jan12_sed_USGS_8_1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9838
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (78.57%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Sediment → Unclassified → Sediment → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.03Long. (o)-122.15Alt. (m)Depth (m)14
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006925Metagenome362Y
F076768Metagenome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0224506_100038454F076768GGCGGMSKVLGKGNYIVAKVNGVKQVLTSAEMQQLINNGYDVEVVTPT
Ga0224506_100038459F006925GAGGVTAGVKLLEDFGREAELRKKWMQMWERLGERILTLPKWMQNIVFEDVNTAIKNRLAIMEMIINANRKR

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