| Basic Information | |
|---|---|
| Taxon OID | 3300022220 Open in IMG/M |
| Scaffold ID | Ga0224513_10000189 Open in IMG/M |
| Source Dataset Name | Sediment microbial communities from San Francisco Bay, California, United States - SF_May12_sed_USGS_21 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 22043 |
| Total Scaffold Genes | 37 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (13.51%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Sediment → Unclassified → Sediment → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: California | |||||||
| Coordinates | Lat. (o) | 37.79 | Long. (o) | -122.36 | Alt. (m) | Depth (m) | 17 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F008497 | Metagenome / Metatranscriptome | 332 | Y |
| F029110 | Metagenome / Metatranscriptome | 189 | N |
| F033812 | Metagenome / Metatranscriptome | 176 | N |
| F039582 | Metagenome | 163 | N |
| F048321 | Metagenome | 148 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0224513_1000018916 | F039582 | N/A | MKVTVDTSDKTTVYTGGEYPVGHITQVVKQYVMKQELADNLLKNMKARIKELENEQGNGDLVYELKMQLHKIGAWYEPESVWADDYTGVPEVDMQLRHAPCQKLGSRSL |
| Ga0224513_1000018925 | F048321 | N/A | MEHWLQSVAINKLSLNIYNQCVDAEGNYFLIGVIDDQTRVATYGVISPVARSQRAIRFDVPTNAAPFNALKTNSFYNVVVYEQTNDTNTSPTDAVVLGLRWEGTMIIDADSEVTFTEYANPTARNYVYYNTED |
| Ga0224513_1000018927 | F008497 | N/A | MRGNVYLSLDTKTFKGLIPEELMKTYGIPQYDEEGVQNGVIKPTFKELGEYNRRKFGANPVVKIGKVKFHIIELEASWVSGELSALLELGKGKEYPNNCLMTRTEAAEFIRDNSDDSII |
| Ga0224513_100001897 | F029110 | N/A | MDKRISELLELNASHVANSGTGSKKDIGGEKEVAKAWKEIQKDIKKIDKEFYEIIKEQ |
| Ga0224513_100001898 | F033812 | N/A | MEIGKQPTEQLLDFCFKTLNKALFEMSQNKAESDRKVLANILMNDLNDKFFRLTAADVTQAFHKGVREGEQLAINPRTWFNWLNKQKMKTNKLRIEQSQDGERLLIESNAQNIDKDEVLKEFLELCVIEPFEEHCKGEDITFQGINQAFQWLELNNFIVLTTKDKEQMWEEVQEEIVARKKFVHNKRKQFHPVIMCREKALRMHFGKWKKAKKNLRKEIYKILDNG |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |