NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0196901_1023074

Scaffold Ga0196901_1023074


Overview

Basic Information
Taxon OID3300022200 Open in IMG/M
Scaffold IDGa0196901_1023074 Open in IMG/M
Source Dataset NameFreshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaG (v3)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2488
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Chesapeake Bay
CoordinatesLat. (o)38.8455Long. (o)-76.4191Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006017Metagenome / Metatranscriptome383N
F027501Metagenome / Metatranscriptome194N

Sequences

Protein IDFamilyRBSSequence
Ga0196901_10230743F027501AGGAGMYSDIKAGIRWIIDNTGVDEAVIEFLRTFVTVSISVALGLGIPLLDITGGDFRTVLSAGLASGLQVLIKFLDPKNTAFGIKENSAEDKAAAEKQFDI
Ga0196901_10230744F006017AGGAMKFKVKSQLDHVEKGGILDDCGPSSTAAAVAWASKYAVDPTAGDGIKAKARATGFVEKEGVSDNGSSLADLIKTAKQLGAKARYAKSWDDVVVSAYRGAALIIWVQQAVDYPTVEISEWHKKWQKYWIKKDRKHIAQGYGHMTAAAWDAVDGWQWACPTRSGKRKEKFGVVVTEEQLKQIAASKKKQTGGAPHKHVVIVEWK
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