| Basic Information | |
|---|---|
| Taxon OID | 3300022195 Open in IMG/M |
| Scaffold ID | Ga0222625_1589078 Open in IMG/M |
| Source Dataset Name | Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5 (Metagenome Metatranscriptome) |
| Source Dataset Category | Metatranscriptome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 4411 |
| Total Scaffold Genes | 7 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (71.43%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: East River, Colorado | |||||||
| Coordinates | Lat. (o) | 38.9201 | Long. (o) | -106.9487 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F006057 | Metagenome / Metatranscriptome | 382 | Y |
| F010456 | Metagenome / Metatranscriptome | 303 | Y |
| F020525 | Metagenome / Metatranscriptome | 223 | Y |
| F030712 | Metagenome / Metatranscriptome | 184 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0222625_15890781 | F020525 | AGGAGG | MKRMLASLAAAAFTVAPLAAQSFGMPNWSSPKGGTGVTISGDLAMPNSNLGKGTAFGARGSLGLANITLTAGLASWKPKGASESFTSFGGQAAFRVIGGSLIPVSISLQVGGAHVGAANGDSAVTRLGLGGAVSVSVPTPGLSIEPYLAVNDRFYKTSGTSGTPSNVAWTLGANVGLGMLGLHIAYDSENLGGGVKGGIFGVGVHVALKAPIGM |
| Ga0222625_15890783 | F006057 | GGAGG | MRKLFGGMVLVVLVLSLPAAAQAQRRAAAPMGGAKHEFGVDVGLAYVSSNITGVDGGIVMVTPLDVRFGFVPRSGKMMWEPRLTLNFSTVGGNTTYLFTPQVNMLYSNSTGGHRRGMYFTGGAGLVLGDGGAGSGTAVKLEGGIGWRKPYEGAAWRYEFGLQWVSSSAELGLAADYIAIGGRIGISLWH |
| Ga0222625_15890784 | F010456 | GGAGG | MRKLTSTLVAAVALVALPHLASAQRRAAASGPKNEIGVDLGASYSHTGSGCNTDCGGLGIGTPVDIRWGFMSNGLVSFEPRFSLNYVSGPNAGGGHFLVFNPDVNVIYRMKKSTARRGMYLTGGVGLAIANTAPSGGSSSTATQLSLNGGVGKRIPMESNAWRIEGFLRYNFENSGKGVPSSFDIGARLGMSFWR |
| Ga0222625_15890785 | F030712 | GGAG | MKQFGLVLLAAALCVVAARPAMAQGVRYGVSAGVLMPIGDYGDVDKLGFVGGAGATYWLAGQPIGIRGDVSYSSTSHDGAGATGSTKILGGTASVVYALNPASAPARIMLTAGVGMYNMDFGGGIAKQTKLGFGGGAAVAFKMGTGSTRLVVGTRYTTVSTDGTSRLNFLPITVGLTFGK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |