NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181354_1014123

Scaffold Ga0181354_1014123


Overview

Basic Information
Taxon OID3300022190 Open in IMG/M
Scaffold IDGa0181354_1014123 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.N
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)2430
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1881Long. (o)-86.344Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F046192Metagenome151Y
F048091Metagenome148Y
F067515Metagenome125Y

Sequences

Protein IDFamilyRBSSequence
Ga0181354_10141231F048091N/AMIEHHFIIKYSKEGGWSWDTDSEEPRYPDGTVWDTESESWSVGYVGWDKEKGEAEYLDDDDLIGEQLGVMLEIANSASKVI
Ga0181354_10141236F046192AGAAGGMAKTIKTHTLLADKGGAVWVEAQLSETQVKRVINMYKRAGIDLAPYGSPNQVSEQVREINAFFTNDERSRPFVEAGRFQVIGVGF
Ga0181354_10141237F067515AGAAGGMKYTITNETLKSKAQDIQQEFENSGASWEGVALEIARLELTLEAIKKDGLEAEIKIDLGTWDGAYCASEEDITHYDPKCCDHDYGSDCRCCCNECENCFQEENTKTI
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