NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181353_1043421

Scaffold Ga0181353_1043421


Overview

Basic Information
Taxon OID3300022179 Open in IMG/M
Scaffold IDGa0181353_1043421 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Fa13.VD.MLB.D.N
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)1186
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.2382Long. (o)-86.2805Alt. (m)Depth (m)8
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001840Metagenome / Metatranscriptome627Y
F010397Metagenome / Metatranscriptome304Y
F103125Metagenome / Metatranscriptome101N

Sequences

Protein IDFamilyRBSSequence
Ga0181353_10434211F103125N/AQQIFPITDTVRLYAYDTDTNDKYDYWIECDVTFVGGKVTEAKLLEFTATDNSERKKQHQKDVEYWNNRRAFEKTLFYKLFGKCYNRSISFVCRRIHTIATWVTCKIWKVEKFLKI
Ga0181353_10434212F001840N/AMKDPDSIFLICDCYEHGLLVEKFKDEEEVSLSLFERGLKGRTLCWSERLRWCWQILRYGRPWSDFVILNTENQKQLKEFLNECKRV
Ga0181353_10434213F010397AGGAGMNVNEFERTKPIVTMQKINELIKLIDEERVKTEILYRDRVRSLDDIGILLKDMKNSFKKG
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