NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181353_1001279

Scaffold Ga0181353_1001279


Overview

Basic Information
Taxon OID3300022179 Open in IMG/M
Scaffold IDGa0181353_1001279 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Fa13.VD.MLB.D.N
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)5058
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (69.23%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.2382Long. (o)-86.2805Alt. (m)Depth (m)8
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F031406Metagenome / Metatranscriptome182Y
F059778Metagenome133N
F061679Metagenome131N
F074572Metagenome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0181353_100127910F074572N/AMKNLVYVAVFCFGVLVGYVAGRMEWAHEDCYDATGKYQRYEAWLSVKDGIYRCFWIEKDYPHRVRIQGIIDVK
Ga0181353_100127912F031406AGGAGGMHHNEEARYHFTLMDMVDLIGDYGYDRVMADLDVAIADKVNRLVQRAVLEDKDE
Ga0181353_100127913F061679N/ATRKTLDGKYLDMCQDCYTGLDVLIPTIDRKDLLHEADMPSMDEIFDEYGDYVDFNDNEDL
Ga0181353_10012795F059778AGGAMKDDLLEKALKYAKTDDYHVTSKIITDLCNEIERLRELNKDVFSRIQDNKEIFNHAERYLWLRNSAWDVPPGAYAPIVVICDNKMATWEWLDGTALDLTIDKWRNDVTL
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