NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181353_1000964

Scaffold Ga0181353_1000964


Overview

Basic Information
Taxon OID3300022179 Open in IMG/M
Scaffold IDGa0181353_1000964 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Fa13.VD.MLB.D.N
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)5647
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (81.82%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.2382Long. (o)-86.2805Alt. (m)Depth (m)8
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007170Metagenome / Metatranscriptome356N
F009888Metagenome / Metatranscriptome311N
F097201Metagenome / Metatranscriptome104N

Sequences

Protein IDFamilyRBSSequence
Ga0181353_10009646F009888GAGGMAIIFDLTEDPQQVVQVSAWVGDWHSYVVRLVDELGSPVDITTGTLGATFTNIATGSSYSFGGGSVTLTKQYSAQGILSVLNPAAYPTSANIRLTVSFTVGSDVRRFGPLEIEVLAP
Ga0181353_10009647F097201GAGGVIKVSYSLKQVNLQAYQKNLGRLSQVVGKAAADIQGEASKSIAMNSGKYRQYGDHWSSPPGTPPNSDTGTLAGSIKAKPLTATSYLVVVEAKYGVPLEFGWISKAGNHVPARPFLRPAVEYVAPSFQAACKVILKGGK
Ga0181353_10009648F007170GGTGGMAFEPAVIEQWIYETLTGDTTLMGLLAPDNKPNGFQMSVYNTIAPQVDPISRKQPITPYIVFDRAGNAGQDQDTICGSRVFTYPTYRITVWDTASGAVSMASSAAIMSRIDTLLDNQHVSSTSPRFYCRRESTAQTFGLESGGRTDFGVTAVYRFVTQQ
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