NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0196887_1046837

Scaffold Ga0196887_1046837


Overview

Basic Information
Taxon OID3300022178 Open in IMG/M
Scaffold IDGa0196887_1046837 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_31 (v3)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1120
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → unclassified Nitrososphaerales → Nitrososphaerales archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.124826Long. (o)-75.260873Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017220Metagenome242Y
F020442Metagenome224Y

Sequences

Protein IDFamilyRBSSequence
Ga0196887_10468372F020442AGGAMTNSILKKSALEKLEKLGLSQEEVLSLIDDGEETIVAEDGESDDTSESKSWQQLVMEEHLGYYNKRYNTDYNFDEYYDGVVNGEIEVHYNWKQMLGLEEQTPFPVDPNVNSEKFKKHGN
Ga0196887_10468373F017220AGGAGMSDPRLLALSERLNKYVGLIRAENPKMKENEILDQASRMALTEQKTFEAKMGMAVSDAVADRFGDGTLIEKAEDGSTIVRVNNEWQQSRGSKISQDGFHKKDHSTITMPKDIDITTPEGDHKAGKFVEELRAAKKRGDKIKQAAEH

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