NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0196887_1001546

Scaffold Ga0196887_1001546


Overview

Basic Information
Taxon OID3300022178 Open in IMG/M
Scaffold IDGa0196887_1001546 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_31 (v3)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9885
Total Scaffold Genes29 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (3.45%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.124826Long. (o)-75.260873Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012164Metagenome / Metatranscriptome283Y
F024118Metagenome / Metatranscriptome207Y
F076259Metagenome118Y

Sequences

Protein IDFamilyRBSSequence
Ga0196887_10015461F012164N/AIKLKIMATELKSIKGKFQSNRSEIGNTQMSLTRFSGGKEGMKLQLTIRNQGEFFTHIAINKKQIKKFIKELQQNFDL
Ga0196887_100154613F076259N/AMTQFEKIGYFIEYMIDTKYIGSKSIDKPDRKEVGYYGRIDSVANQDILLDNNKRIKKGQSYYTRMYPLCGNYINK
Ga0196887_100154626F024118N/AMASVPKDKLLHFFYGTIIATPLVILGTTMEAIGFMIFISIGKEIVDAKMRFSPPNGLDAVFTFLPTLLLLAVKLL
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.