NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0196893_1001255

Scaffold Ga0196893_1001255


Overview

Basic Information
Taxon OID3300022159 Open in IMG/M
Scaffold IDGa0196893_1001255 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_28 (v3)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1989
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.149325Long. (o)-75.288339Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001018Metagenome / Metatranscriptome804Y
F006619Metagenome / Metatranscriptome368Y

Sequences

Protein IDFamilyRBSSequence
Ga0196893_10012553F001018N/AMTQITQAKLKELNVIKLYEHYGALERSLPLLTPESQEMAKAELEACANLRSEKIDRIYYAMASHEDAIERIKKEATLVTEAKRHHESQLRSLKGLLNYLRRVLPKDSNKITGRNYEFTLARKKELSVEITSDPQFWHTEERATYCIEQEVTTTKRTVLRSMSGEVLSERTEPKTTTTVVPNLDAIRSAYKDGKQLPLGVKVTQEYSVRSKRIFSEANVDLVPSEYPRELLREDSSTEGC
Ga0196893_10012556F006619N/ASLDTVEEVKPIFGEPWCSCGSYQQQLNNISSFSQEIEGFKPWCIHLSWFNKYREMLSKRTEARNQAPNGTPSKCVAWWYQPPSDHLSDGLFKVLYTTYGAQAPVSHWRNYKPDEHFTQNHAWDLFFNMMEAGYVPFPGRSLPQLQSVVKKQ
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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