NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0224906_1054905

Scaffold Ga0224906_1054905


Overview

Basic Information
Taxon OID3300022074 Open in IMG/M
Scaffold IDGa0224906_1054905 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 56 SPOT_SRF_2014-09-10 (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1265
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F031506Metagenome / Metatranscriptome182N
F031928Metagenome181N
F084260Metagenome / Metatranscriptome112N

Sequences

Protein IDFamilyRBSSequence
Ga0224906_10549051F031928AGGAMTYNMNFSKLKHFDNEDNDFGMSSWDQIDRDNCRKTAESMGWLLMYVHLDKITEDSIDEIIFRMQFADTIHGSTFMRVNGKDCSVSEVRHQLEQHIGLETNGSVSTRHKYIVNVAKNLANDIDYKLTEENNK
Ga0224906_10549052F084260GAGMEILFALGLLAIVGFGLWSMRETNKFVDEQNRQIRLQRACDRVDELVKQKQMEFKFDK
Ga0224906_10549053F031506N/AKKCLNILYTGSHIQPTLVELQKEMATANIQLDLPNSLLALPSK
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