NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0224906_1020764

Scaffold Ga0224906_1020764


Overview

Basic Information
Taxon OID3300022074 Open in IMG/M
Scaffold IDGa0224906_1020764 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 56 SPOT_SRF_2014-09-10 (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2357
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001839Metagenome628Y
F004990Metagenome416Y
F008915Metagenome / Metatranscriptome326Y

Sequences

Protein IDFamilyRBSSequence
Ga0224906_10207641F001839AGGAMKYFEKIDKDLLNNRALNSHEKLIYVICKSFENAPRGCRISHKYLMQRTGIKTVPTLVRCLDRLTMFGCLARKQIDNSTCHYVFDKKTMQEYIQHNLNKRKKISLSKNRHNRNLKAALSSPNVINMGKVIK
Ga0224906_10207642F004990GGAMYGDPKKKCCSCENGADLKEGNKYYCCDHYAIHVLGKTMAQIEKELTEIK
Ga0224906_10207644F008915GAGGMENNSITLDLYEMQSAAHLGILRCLESEKYQEKWGYNYKGSLNDQMAKSISGAMGEVALAKFLKIKFEYHCNVGGVPDLIFKDLRLQIRTQIPKNNNSLIIRPKAKPNEFYILVIDEAPNFKILGFVNSTYVLGQDRFKTDFGLARPPCYSIPPDKLTPINLLKDSSWN
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