NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0224906_1014888

Scaffold Ga0224906_1014888


Overview

Basic Information
Taxon OID3300022074 Open in IMG/M
Scaffold IDGa0224906_1014888 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 56 SPOT_SRF_2014-09-10 (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2910
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012834Metagenome277Y
F043684Metagenome156N

Sequences

Protein IDFamilyRBSSequence
Ga0224906_10148884F043684N/AMSLEKVDLNWEEILSGAITGIVRETESLKANIQWGHGASFDRYQKWGKTISGCLAEMALAKIMKSYFTHSVNNFQGKDLIINDKPVQVRSQLFSKSYKSLIIRKGFKAEDYYFYVSDDTPTFYFHGYIQAKDCQKCGTWTNFGKQTRPFVWSVDIDKLKPIEEFKNE
Ga0224906_10148885F012834N/AMKERFTDTAWTEGDFNKATSSPSQTALSNWVWFIKYHLSPHLKFKSERPSISFKAGTFIHEWFQNILVGQAKIEDVEHHFKNHIDQFKFSENEGIKAQFILKYVKSYVEKHLEAINEVSDNFSGWKIEHPFSDWYDDKYMDQTLNIASEGYIDCVNDNENKITEHKNRFGSVRKSPLKVNRKDSNINRIGDWVYSKSQLIKQPQFTHCIQTAVYSKHFKNKYKPYLIYVSEADYTIFTPDNCWELTPKGLEYFFRKFIQINIKRQELLRASNGSIKRLACLIDVDWSEIRNYKSNFMLKNYEEEDMQRLEDFYEKL
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