NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0224906_1011565

Scaffold Ga0224906_1011565


Overview

Basic Information
Taxon OID3300022074 Open in IMG/M
Scaffold IDGa0224906_1011565 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 56 SPOT_SRF_2014-09-10 (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3388
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003976Metagenome / Metatranscriptome459Y
F010571Metagenome302Y
F021404Metagenome219Y
F038195Metagenome166Y

Sequences

Protein IDFamilyRBSSequence
Ga0224906_10115651F003976GGAGGMSRVYNDYYFEKLDILDTLEKLDMSVRLLNVWVNEPMGFENAKYLLEKNANQEFKWFSRDMVKELVEEVDDE
Ga0224906_10115652F010571AGGAGGMSNIRTETYADKLYEEQYEKHYQELSKTSDDVDWIENEAERLALIDLDNFEMEG
Ga0224906_10115653F038195GAGGMRQDSKMKLHKDFYEYKTIPFTYFAKIKNRNDFKREWVSVRCQEDIMKQQPQNVEIRRLKKNV
Ga0224906_10115658F021404N/AMNYKVNDKVNYFFKGDEDNEPCNDVMIVKALKDLDNGEVFKLKPTSNNNNVLIKGDYDKSKNKYWATKWHDIKCSTLKDGNTLVFTSFIF
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