NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0224906_1002308

Scaffold Ga0224906_1002308


Overview

Basic Information
Taxon OID3300022074 Open in IMG/M
Scaffold IDGa0224906_1002308 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 56 SPOT_SRF_2014-09-10 (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8785
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (19.05%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019754Metagenome228Y
F020110Metagenome226N
F022313Metagenome215Y
F023484Metagenome210N

Sequences

Protein IDFamilyRBSSequence
Ga0224906_100230816F019754N/AMNNSDDFMLPNELEPAWPPSDDDIDAMELDAYDRQKLQDLIDHELFMDEMAGVPTPQELNPNLK
Ga0224906_100230818F020110N/AMSTQQEVQARLSYTRAMLERGIRTASVATMVSAKFCVSRSTAYNDITASQAEIDLSEDGPSLEESSEPINTNSVLAMLQHRLEVSVATGDDKAVCSLIKAMNQAKQWNGYNTQSVSPFA
Ga0224906_100230819F023484N/AMNVNTESGGFLIASLGRYTSKTEKIIFFKTRAGSLVSSYYISTFNAIKEGVGLMLSNSCDPDQVIDADQVAKCKTFIRNHS
Ga0224906_100230820F022313N/AMTYNYLPKEEYEVYKLERILKQLEGIVNRENKRHEMDQHLHSHTTELLELELIPALEAEVNYDPTPDTAYDFFH
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