NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0232635_1060036

Scaffold Ga0232635_1060036


Overview

Basic Information
Taxon OID3300021973 Open in IMG/M
Scaffold IDGa0232635_1060036 Open in IMG/M
Source Dataset NameHydrothermal fluids microbial communities from Mariana Back-Arc Basin vent fields, Pacific Ocean - Alice_FS923 _150kmer
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMarine Biological Laboratory
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)865
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Hydrothermal Vent Fluids → Characterization Of Microbial Community From Mariana Back Arc

Source Dataset Sampling Location
Location NameAlice Springs vent field, Mariana back arc basin
CoordinatesLat. (o)18.210325Long. (o)144.707309Alt. (m)Depth (m)3610
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002745Metagenome533Y
F032311Metagenome / Metatranscriptome180Y

Sequences

Protein IDFamilyRBSSequence
Ga0232635_10600361F002745GAGMKSFKGYLTEFAIQSTSDYVFNAGSDSSALKIPISGPMFKRIWPDTIRTTVFHTTDLGGLANLKKLEGGKKSISAFFSMMSRYMETGVATGDDVHVVVEMDADVLVSARDDIWSIVDKTGRRWVELSWFANAQLGRTGAEFGKVEKDLNTLIKNLVKKHLTPILGKNAVVREHEYELWSNMKSHLKAGREGGGNRLRLVIKDYFDGVEKVLKKNSEVMGNILYGYAKGKRMTDNAWDEQI
Ga0232635_10600362F032311N/AMRMKPNKPVFKFKSPNSDMMIQVFLKKMLPSKGQPKGMMAFNYQFEDK
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Institute for Fundamental Biomedical Research
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