NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0232635_1011816

Scaffold Ga0232635_1011816


Overview

Basic Information
Taxon OID3300021973 Open in IMG/M
Scaffold IDGa0232635_1011816 Open in IMG/M
Source Dataset NameHydrothermal fluids microbial communities from Mariana Back-Arc Basin vent fields, Pacific Ocean - Alice_FS923 _150kmer
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMarine Biological Laboratory
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1919
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Hydrothermal Vent Fluids → Characterization Of Microbial Community From Mariana Back Arc

Source Dataset Sampling Location
Location NameAlice Springs vent field, Mariana back arc basin
CoordinatesLat. (o)18.210325Long. (o)144.707309Alt. (m)Depth (m)3610
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F052875Metagenome142N
F083241Metagenome113N
F092722Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0232635_10118161F052875GAGGVELAAVQQLVAAVGPIGAMLVIGAWWFATHQEKRSGVPDQVARMKARDAIIQISADVAHMKKDIADIKADGKTTSTTLMQHMAQQHTRGR
Ga0232635_10118162F092722AGGGGGMYFVVGDIRFPITFPANWANIGVPNNEAVSQPVQIPTQVVGYKTTK
Ga0232635_10118165F083241AGGAGMTPWATLQYLEIVEPIGDAFTDWEAYASAWENSAAKLMPVGHDDEYKMRYWMAGAPTPGFYMQISTPTFSPDATSVPAPVSFELFTTGRRSIDVRTA
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