NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222719_10062274

Scaffold Ga0222719_10062274


Overview

Basic Information
Taxon OID3300021964 Open in IMG/M
Scaffold IDGa0222719_10062274 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_34D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2811
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (54.55%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)37.495Long. (o)-122.0933Alt. (m)Depth (m)4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022879Metagenome / Metatranscriptome212Y
F057119Metagenome / Metatranscriptome136Y
F097255Metagenome / Metatranscriptome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0222719_100622746F022879AGGAGMTHHVAHMDKMLFDLKQQYQAQITRLQNKISEQEQEILKLKTLISLLSVEREYDV
Ga0222719_100622748F057119GGAGMVFFAGVSLGVLLTIGAALILAGDVNNLDEGDENHYN
Ga0222719_100622749F097255AGGMLPKRVRELIMNAEREKIAREFWDEIERLAAEKEVTVEYFLAEFY

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